GST Notices & Assessments
Facing GST notices or assessments? Read the guide below to understand how we can assist you in responding to GST inquiries, managing assessments, and ensuring compliance with tax authorities.

GST (Goods and Services Tax) is an all-inclusive indirect tax assessed on India's supply of goods and services. Businesses registered under GST must comply with binding filing deadlines, tax payments, and accurate financial records. Non-compliance or error in these areas often leads to the issuance of GST Notices by the tax authorities. These notices are formal communications seeking clarifications, rectifications, or further action about the taxpayer's GST filings, assessments, or payments. Failing to respond or comply with these notices can result in severe consequences, including penalties, interest on overdue taxes, or even legal proceedings.
The GST Assessment process refers to the evaluation of returns filed by businesses, wherein tax authorities evaluate the accuracy of the declarations made in the returns. Depending on the specific circumstances, assessments can be carried out under different sections, such as self-assessment, provisional, or best judgement assessment. Understanding the types of notices issued, the assessment procedure, and the associated legal requirements is crucial for businesses to ensure compliance and avoid costly disputes. A proactive approach to managing GST notices not only safeguards against penalties but also promotes efficient tax management.
Our Services
We at Benchmark, we provide you with specialised services made for managing GST Notices & Assessments, making sure compliance, minimising risks, and resolving disputes effectively.
Our service offerings under GST Notices & Assessments include:
- We help you with analyzing, drafting, and submitting responses for all types of GST notices, like GSTR-3A, Demand Notices, and Show Cause Notices under Sections 73 & 74.
- To identify inconsistencies before they turn into notices, we conduct detailed forensic analysis of GST returns, ITC claims, and transactional data,
- We handle scrutiny under Section 61 and full-scale GST audits under Section 65.
- We reconcile your ITC as per GSTR-2A, GSTR-2B, and vendor data to identify if there are any kind of mismatches and then draft responses to ITC disallowance notices.
- We help businesses file applications under Section 60 for provisional assessments where there is uncertainty in tax rate or valuation, ensuring compliance and documentation accuracy.
- We represent your business in assessment proceedings, including Best Judgment Assessment under Section 62 and unregistered persons' assessments under Section 63.
- We analyse your demand orders, verify tax liability calculations, and file rectification applications.
- We help your business to identify any potential penalty exposures and implement preemptive measures to reduce the risk of high tax liabilities or interest charges.
- We review E-Way Bill records and their alignment with GST returns to ensure compliance, preventing notices related to transportation mismatches.
Types of GST Notices
Under the GST system, various types of notices are issued to taxpayers based on the nature of non-compliance, errors, or discrepancies in returns. Below is a comprehensive list of common GST notices, their purpose, and the relevant sections under which they are issued:
Types of Notice | Purpose | Section/Rule |
---|---|---|
GSTR-3A |
Issued for failure to file GST returns within the prescribed due date. | Rule 68 of CGST Rules |
GSTR-1A |
Discrepancies in outward supplies between GSTR-1 and the receiver's GSTR-2. | N/A |
GSTR-9 |
Discrepancies are found in the reconciliation statement of annual returns. | Section 44 of CGST Act |
Summary Show Cause Notice (SCN) |
Issued when there is a short payment, non-payment, or incorrect refund claim. | Section 73 (Non-fraud cases), Section 74 (Fraud cases) |
Audit Notice |
Issued to initiate an audit of the taxpayer's financial records under GST. | Section 65 of the CGST Act |
Demand Notice |
Issued to demand tax, penalty, or interest after scrutiny or investigation. | Section 73/74 of CGST Act |
Notice for provisional assessment |
Issued when there is uncertainty about the rate of tax or value of goods/services. | Section 60 of CGST Act |
Notice for Scrutiny of Returns |
Issued when inconsistencies are found in the filed GST returns. | Section 61 of CGST Act |
Best Judgement Assessment Notice |
Issued when the taxpayer fails to file returns, leading to assessment based on available information. | Section 62 of CGST Act |
Notice for Cancellation of Registration |
Issued when a business fails to comply with GST regulations, leading to the potential cancellation of GST registration. | Section 29 of CGST Act |
Why Choose Benchmark for Your GST Notices & Assessments
At Benchmark, we specialise in providing complete solutions for managing GST Notices and managing the complex GST Assessment process. With our knowledge of Goods and Services Tax laws, we help your business to stay compliant while minimising the risks of penalties and disputes.
Our team of experienced professionals understands the details of GSTR filings, ITC (Input Tax Credit) claims, and the specifics of Section 73 and 74 Show Cause Notices, ensuring that all your responses to the tax authorities are timely, accurate, and backed by the necessary documentation.
We offer end-to-end services, from analysing discrepancies in your GSTR-1, GSTR-3B, and annual returns, to representing you during GST audits and hearings. Our proactive approach helps mitigate non-compliance risks by conducting thorough reconciliations, managing self-assessments, and addressing potential issues before they escalate into costly disputes. With Benchmark, you can be assured that your GST compliance is in expert hands, allowing you to focus on your core business operations.
Features of the GST Assessment Process for Businesses
The GST Assessment Process is an essential aspect of compliance for businesses, ensuring that taxes are correctly declared and paid promptly. Below are the key features of the assessment process:
Features | Description |
---|---|
Self-Assessment (Section 59) | Businesses are required to assess and file their GST liability through self-assessment, based on the information provided in their GSTR-1 and GSTR-3B filings. This process allows for flexibility but requires accurate record-keeping to avoid future discrepancies. |
Provisional Assessment (Section 60) | When businesses face uncertainty regarding the tax rate or valuation of goods and services, they can request a Provisional Assessment. The final tax liability is determined after the submission of necessary documents, and any additional liability is paid or refunded. |
Scrutiny of Returns (Section 61) | Tax authorities may conduct a Scrutiny of Returns to identify discrepancies or mismatches in the filed returns (e.g., between GSTR-1 and GSTR-3B). If inconsistencies are found, businesses are notified and required to provide explanations or make corrections. |
Best Judgement Assessment (Section 62) | In cases where businesses fail to file returns, the authorities can initiate a Best Judgement Assessment, determining the tax liability based on available data. This can result in inflated liabilities, which businesses must contest or rectify through proper documentation. |
Audit of Returns (Section 65) | The authorities may issue an Audit Notice under Section 65 to conduct an in-depth audit of the business's financial records and GST filings. This is often triggered by significant discrepancies or non-compliance in previous assessments. |
Assessment of Unregistered Persons (Section 63) | When taxable supplies are made by businesses that fail to register under GST, authorities may conduct an assessment under Section 63, resulting in the levy of back taxes, interest, and penalties for non-compliance. |
Demand for Tax (Sections 73 & 74) | When underpayment or non-payment of GST is detected, the authorities issue a Show Cause Notice (SCN) under Section 73 (non-fraud cases) or Section 74 (fraud cases). This notice demands payment of the tax along with interest and applicable penalties. |
Filing of Appeals (Sections 107 & 112) | If businesses disagree with the assessment or the demand notice issued, they can file an appeal under Section 107 (first appellate authority) or Section 112 (Appellate Tribunal) to contest the assessment findings. |
Key Documents Required for GST Notices & Assessments
When responding to GST Notices or undergoing an Assessment, it is crucial for businesses to provide the required documents to ensure compliance and avoid penalties. Below is a list of key documents that businesses should have ready:
- GST Registration Certificate: Proof of your business's registration under GST, essential for any communication with the tax authorities.
- GSTR-1: This return captures details of outward supplies made by the business. It is critical to ensure that these are filed accurately, as discrepancies between GSTR-1 and GSTR-3B often trigger notices.
- GSTR-3B: A monthly self-declaration return that reports summary details of sales and input tax credit (ITC). Any mismatch between GSTR-1 and GSTR-3B can lead to scrutiny or audit notices.
- GSTR-9 (Annual Return): This document consolidates the yearly summary of outward and inward supplies, taxes paid, and ITC claimed. It is mandatory for businesses to file this annually to avoid penalties.
- GSTR-9C (Reconciliation Statement): Filed by businesses with an annual turnover exceeding Rs. 2 crore, this statement reconciles the audited financial statements with the annual return (GSTR-9), highlighting any discrepancies.
- Input Tax Credit (ITC) Records: Detailed records of ITC claimed on purchases, which must align with the data in GSTR-2A and GSTR-2B to avoid notices related to ITC mismatches.
- Purchase and Sales Invoices: Accurate and complete invoices for all transactions, as these are required to verify the data reported in GST returns and during scrutiny or audits.
- E-Way Bills: For businesses involved in the movement of goods, E-Way Bills are crucial to establish compliance with transportation regulations and must match the corresponding invoices and returns.
- Bank Statements and Financial Records: Bank statements and other financial documents provide crucial support for the declarations made in GST returns and are often required during audits or investigations.
- Audit Reports: For businesses that undergo internal or external audits, audit reports are essential to support the financial disclosures and tax calculations provided in GST returns.
- ITC Reconciliation Statements: To address notices related to ITC discrepancies, businesses must provide a reconciliation statement that compares the ITC claimed in GST returns with actual purchase data.
- Contracts and Agreements: Any contracts related to the supply of goods or services, especially in case of cross-border transactions or high-value contracts, may be requested by authorities for verification.
Process for Handling GST Notices & Assessments
Managing GST Notices and understanding the GST Assessment Process requires a systematic approach to ensure compliance and avoid penalties. Below is a step-by-step guide to how Benchmark handles GST notices and assessments, ensuring that businesses remain compliant while minimising risks:
Step 1: Receipt of GST Notice
When a business receives a GST Notice (such as GSTR-3A, GSTR-1A, or a Show Cause Notice under Section 73 or Section 74), the first step is to identify the type of notice and the specific compliance issue raised by the tax authorities. It is essential to act promptly, as each notice has a specific response time frame.
Step 2: Analysis of the Notice
Our team at Benchmark conducts a thorough analysis of the notice to understand the discrepancy or non-compliance issue, whether it is related to GSTR-3B filing, Input Tax Credit (ITC) mismatches, or non-payment of GST. We review all relevant data, including filed returns, purchase and sales invoices, and reconciliation statements.
Step 3: Preparation of Response
Once the issue is identified, we prepare a detailed and accurate response to the notice. For example, in the case of a Show Cause Notice (SCN) under Section 73 or Section 74, we provide a point-by-point explanation of the discrepancies and submit supporting documents like GSTR-1, GSTR-3B, and ITC records to justify the claims. Timely responses are crucial to avoid escalation or penalties.
Step 4: Submission of Documents
For audits or scrutiny assessments, businesses must submit key documents such as purchase and sales invoices, bank statements, E-Way Bills, and GSTR-9 or GSTR-9C reconciliation statements. Benchmark ensures all documentation is complete and organised for submission to the tax authorities.
Step 5: Representation During GST Hearings
If the tax authorities schedule a hearing, Benchmark's team represents your business, ensuring that all queries from the authorities are addressed. We also provide legal support in cases where further explanation or defence is required during the assessment hearings.
Step 6: Receipt of Assessment Order
After all information is reviewed, the authorities issue a final GST Assessment Order, either accepting the submissions or demanding additional taxes, penalties, or interest. Benchmark helps businesses navigate these orders, ensuring any required payments are made on time and advising on potential appeals.
Step 7: Filing an Appeal
If businesses disagree with the GST Assessment Order, we assist in filing an appeal under Section 107 (before the first appellate authority) or Section 112 (before the Appellate Tribunal). This step involves preparing detailed appeal documents and providing legal representation to contest the assessment.
Step 8: Monitoring and Follow-up
Benchmark ensures that all follow-up actions are tracked, including payment of any demanded taxes, penalties, or interest. We also monitor for any further notices or audits, keeping businesses prepared for future assessments.
Step 9: Proactive Compliance Management
To reduce the likelihood of future notices, we implement proactive compliance measures, including regular GST reconciliations, timely filings of GSTR-1, GSTR-3B, and GSTR-9, and conducting periodic internal audits of GST-related transactions.
Compliance and Best Practices to Avoid GST Notices
Ensuring compliance with GST regulations is essential to avoid receiving notices from tax authorities. Timely filing of GSTR-1, GSTR-3B, and GSTR-9 returns is the first step toward maintaining GST compliance. Businesses should ensure that all Input Tax Credit (ITC) claims are accurately reconciled with GSTR-2A and GSTR-2B, as mismatches can trigger scrutiny or audit notices. Regularly reviewing sales and purchase invoices helps prevent discrepancies that may arise during audits or GST assessments.
Maintaining up-to-date records, especially E-Way Bills for goods transportation, is essential for compliance with GST transportation laws. Your business should also conduct recurring internal audits of its financial records and GST filings to identify possible problems early on. Another important procedure to prevent non-compliance problems is to make sure that your business information and GSTIN details are up to date on the GST portal.
Penalties and interest charges can be reduced by proactive reconciliation of tax liabilities and returns and prompt response to Show Cause Notices (SCN). Last but not least, hiring experts to manage GST assessments, audits, and appeals guarantees that companies follow the law and lessens the possibility of receiving notices in the future.
How to Handle GST Disputes and Appeals
Handling GST disputes effectively requires a clear understanding of the legal framework and the correct procedures to challenge assessments or penalties. Below are the key steps involved in managing GST disputes and filing appeals:
- Filing for Rectification or Reassessment: In case of discrepancies or errors in the original GST filings, businesses can file for rectification or reassessment under Section 161 to correct the mistakes before an order is passed.
- Responding to Show Cause Notices (SCN): Upon receiving a Show Cause Notice (SCN) under Section 73 or Section 74, businesses must submit a detailed response within the stipulated time frame, backed by supporting documents like GSTR-1, GSTR-3B, and ITC reconciliation records.
- Filing an Appeal with the First Appellate Authority: If businesses disagree with the final Assessment Order, they can file an appeal with the First Appellate Authority under Section 107. This involves submitting the required documents, including the original notice, assessment order, and grounds for the appeal.
- Appeals to the Appellate Tribunal: If the decision of the First Appellate Authority is unfavourable, businesses can escalate the appeal to the Appellate Tribunal under Section 112. This step requires detailed preparation, including legal representation, to challenge the assessment or demand notice.
- Appeal to High Court or Supreme Court: For complex GST disputes involving substantial legal questions, businesses may further escalate the matter to the High Court under Section 117 or to the Supreme Court under Section 118.
- Seeking a Stay on Demand: During the appeal process, businesses can apply for a stay on demand raised by the authorities, ensuring that no penalties or liabilities are enforced while the case is under appeal.
- Engaging Professional Representation: Throughout the GST dispute and appeal process, it is advisable to engage GST consultants or legal professionals to represent the business during hearings and ensure compliance with procedural requirements.
Non-Compliance Issues Related to GST
Failure to comply with the Goods and Services Tax (GST) regulations can lead to significant penalties, interest, and even legal actions. Non-compliance often results from discrepancies in filings, missed deadlines, or incorrect claims. Below are some of the most common non-compliance issues businesses face under GST:
- Failure to file GSTR-1, GSTR-3B, or GSTR-9 on time
- A mismatch between GSTR-2A and ITC (Input Tax Credit) claims
- Incorrect or fraudulent claims of Input Tax Credit (ITC)
- Non-payment or short payment of GST under Section 73 (non-fraud cases) or Section 74 (fraud cases)
- Non-maintenance of proper tax records and invoices as per GST rules
- Discrepancies in E-Way Bills for goods transportation
- Late submission of returns leading to interest and penalties under Section 50
- Failure to update GSTIN details or business-related information
- Not responding to Show Cause Notices (SCN) within the stipulated time
- Non-compliance with GST audit requirements under Section 65
Conclusion
Managing GST Notices and understanding the complex GST Assessment Process can be challenging for businesses. However, with effective compliance measures and expert guidance, you can minimise risks, avoid penalties, and ensure smooth interactions with the tax authorities. At Benchmark, our team of experienced professionals is committed to helping businesses stay compliant by offering end-to-end services, from responding to Show Cause Notices (SCN) to representing you in GST appeals and assessments.
Don't let GST compliance issues disrupt your business operations. Whether you're dealing with Input Tax Credit (ITC) discrepancies, non-compliance notices, or require assistance with GST audits, we are here to provide expert support. Contact Benchmark today to safeguard your business against potential GST risks and ensure full compliance with the tax authorities.
Get in Touch
Take the first step towards seamless GST management. Get in touch with us now to schedule a consultation and learn how we can help you handle all aspects of GST Notices & Assessments with confidence and expertise.
FAQs
What should I do if I miss the deadline for responding to a GST Notice?
If you miss the deadline for responding to a GST Notice, it is crucial to act immediately. Failure to respond within the stipulated time frame can lead to further legal actions, such as a Best Judgement Assessment under Section 62, which may result in an inflated tax liability. In such cases, you can file a petition for condonation of delay, explaining the reasons for the missed deadline, along with your response to the notice.
Can GST assessments be challenged if my business disagrees with the tax authorities' findings?
Yes, GST assessments can be challenged through an appeal process. Initially, you can file an appeal with the First Appellate Authority under Section 107, and if necessary, escalate the appeal to the Appellate Tribunal under Section 112.
What is the process for rectifying mistakes in GST returns?
Mistakes in GST returns can be rectified in the subsequent return filing period. However, errors that involve under-reporting or over-reporting tax liabilities may require a revised return under Section 39(9), or a rectification request can be submitted if the error is identified before the tax period ends.
What are the penalties for late filing of GST returns?
Late filing of GST returns, such as GSTR-1, GSTR-3B, or GSTR-9, attracts late fees and interest under Section 50 of the GST Act. For each day of delay, a late fee of Rs. 50 (Rs. 25 each for CGST and SGST) is imposed, with a maximum cap of Rs. 10,000. Additionally, interest is levied at 18% per annum on the outstanding tax liability.
Can a GST registration be cancelled due to non-compliance?
Yes, the tax authorities can issue a notice for cancellation of GST registration under Section 29 if they find that a business has repeatedly failed to comply with GST regulations. This includes not filing returns for a specified period or discrepancies in tax payments.